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Cryo-EM structures of autoinhibited and RNA-activated ZNFX1 helicase

Qing He, Feng Wang, Feyruz Virgilia Rassool, Stephen B. Baylin, Huilin Li

Revista con revisión por pares

En palabras de los autores

Abstract ZNFX1 is an RNA helicase that plays a critical role in host defense against viral infections. Recent studies further revealed that ZNFX1 harbors an unexpected RNA-ubiquitinating E3 ligase activity, raising fundamental questions about how RNA-binding activates this multifunctional enzyme. Here, we combine cryo-electron microscopy with biochemical analyses to define the structural basis of ZNFX1 regulation. In the absence of RNA, ZNFX1 adopts an autoinhibited conformation in which a blocking helix occludes the RNA-binding groove. It exists predominantly as autoinhibited monomers, and, at higher concentrations, assembles into short helical filaments composed of repeating tetramers. Binding of single-stranded RNA (ssRNA) remodels these higher-order assemblies into RNA-bound ZNFX1 monomers and dimers. The cryo-EM structure of the ssRNA-bound ZNFX1 dimer reveals that RNA binding displaces the blocking helix and induces large-scale conformational rearrangements that remodel the helicase core into an active configuration. Biochemical analyses validate the proposed RNA-binding interfaces and demonstrate ATP-dependent RNA unwinding by ZNFX1. Together, these findings support a regulatory mechanism in which autoinhibited ZNFX1 exists as monomers or concentration-dependent higher-order oligomers, whereas RNA binding promotes structural remodeling and helicase activation.

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Apareció: domingo, 27 de septiembre. Nature Communications. Revista con revisión por pares.

DOI: 10.1038/s41467-026-78145-0